IL_4V7J_348
3D structure
- PDB id
- 4V7J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7J_348 not in the Motif Atlas
- Homologous match to IL_4LFB_047
- Geometric discrepancy: 0.1157
- The information below is about IL_4LFB_047
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
4V7J|1|Ba|G|1061
4V7J|1|Ba|U|1062
4V7J|1|Ba|C|1063
*
4V7J|1|Ba|G|1193
4V7J|1|Ba|U|1194
4V7J|1|Ba|C|1195
Current chains
- Chain Ba
- RNA (1504-MER)
Nearby chains
- Chain Bc
- 30S ribosomal protein S3
- Chain Be
- 30S ribosomal protein S5
- Chain Bi
- 30S ribosomal protein S9
- Chain Bj
- 30S ribosomal protein S10
- Chain Bn
- 30S ribosomal protein S14 type Z
- Chain Bx
- RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')
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