IL_4V7J_388
3D structure
- PDB id
- 4V7J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7J_388 not in the Motif Atlas
- Homologous match to IL_5J7L_361
- Geometric discrepancy: 0.0635
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
4V7J|1|Ba|G|673
4V7J|1|Ba|G|674
4V7J|1|Ba|A|675
4V7J|1|Ba|A|676
4V7J|1|Ba|U|677
*
4V7J|1|Ba|G|713
4V7J|1|Ba|G|714
4V7J|1|Ba|A|715
4V7J|1|Ba|A|716
4V7J|1|Ba|C|717
Current chains
- Chain Ba
- RNA (1504-MER)
Nearby chains
- Chain BD
- 50S ribosomal protein L2
- Chain Bf
- 30S ribosomal protein S6
- Chain Bk
- 30S ribosomal protein S11
- Chain Br
- 30S ribosomal protein S18
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