IL_4V7J_393

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUCGG*CCGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7J_393 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3671

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V7J|1|Bw|G|49
4V7J|1|Bw|U|50
4V7J|1|Bw|C|51
4V7J|1|Bw|G|52
4V7J|1|Bw|G|53
*
4V7J|1|Bw|C|61
4V7J|1|Bw|C|62
4V7J|1|Bw|G|63
4V7J|1|Bw|G|64
4V7J|1|Bw|C|65

Current chains

Chain Bw

RNA (77-MER)

Nearby chains

Chain BC

50S ribosomal protein L1