3D structure

PDB id
4V7J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CAU*AG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7J_407 not in the Motif Atlas
Homologous match to IL_4LFB_004
Geometric discrepancy: 0.2486
The information below is about IL_4LFB_004
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_34520.1
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
58

Unit IDs

4V7J|1|Ba|C|54
4V7J|1|Ba|A|55
4V7J|1|Ba|U|56
*
4V7J|1|Ba|A|356
4V7J|1|Ba|G|357

Current chains

Chain Ba
RNA (1504-MER)

Nearby chains

Chain Bt
30S ribosomal protein S20

Coloring options:


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