IL_4V7K_081

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGC,GCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_081 not in the Motif Atlas

Geometric match to IL_1WNE_001

Geometric discrepancy: 0.2358

The information below is about IL_1WNE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V7K|1|AA|C|2103
4V7K|1|AA|G|2104
4V7K|1|AA|C|2105
*
4V7K|1|AA|G|2184
4V7K|1|AA|C|2185
4V7K|1|AA|G|2186

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain AC

50S ribosomal protein L1