IL_4V7K_216

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGC*GCCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7K_216 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2168

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V7K|1|BA|G|881
4V7K|1|BA|G|882
4V7K|1|BA|G|883
4V7K|1|BA|C|884
*
4V7K|1|BA|G|892
4V7K|1|BA|C|893
4V7K|1|BA|C|894
4V7K|1|BA|U|895

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain BZ

50S ribosomal protein L25