3D structure

PDB id
4V7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
4V7K|1|Ba|U|244, 4V7K|1|Ba|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7K_310 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.0806
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

4V7K|1|Ba|C|242
4V7K|1|Ba|A|243
4V7K|1|Ba|U|244
4V7K|1|Ba|C|245
4V7K|1|Ba|A|246
4V7K|1|Ba|G|247
*
4V7K|1|Ba|C|277
4V7K|1|Ba|G|278
4V7K|1|Ba|A|279
4V7K|1|Ba|C|280
4V7K|1|Ba|G|281
4V7K|1|Ba|A|282
4V7K|1|Ba|C|283
4V7K|1|Ba|G|284

Current chains

Chain Ba
RNA (1504-MER)

Nearby chains

Chain Bl
30S ribosomal protein S12
Chain Bq
30S ribosomal protein S17

Coloring options:


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