3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGUAG*CGCC
Length
9 nucleotides
Bulged bases
4V7L|1|DA|A|1490
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7L_456 not in the Motif Atlas
Geometric match to IL_1GID_008
Geometric discrepancy: 0.3747
The information below is about IL_1GID_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85033.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
36

Unit IDs

4V7L|1|DA|G|1487
4V7L|1|DA|G|1488
4V7L|1|DA|U|1489
4V7L|1|DA|A|1490
4V7L|1|DA|G|1491
*
4V7L|1|DA|C|1499
4V7L|1|DA|G|1500
4V7L|1|DA|C|1501
4V7L|1|DA|C|1502

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain DD
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1725 s
Application loaded.