3D structure

PDB id
4V7M (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of Capreomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.45 Å

Loop

Sequence
GAUG*CUAAUC
Length
10 nucleotides
Bulged bases
4V7M|1|CA|U|1257, 4V7M|1|CA|U|1278, 4V7M|1|CA|A|1280, 4V7M|1|CA|U|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7M_228 not in the Motif Atlas
Geometric match to IL_4LFB_052
Geometric discrepancy: 0.3261
The information below is about IL_4LFB_052
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

4V7M|1|CA|G|1255
4V7M|1|CA|A|1256
4V7M|1|CA|U|1257
4V7M|1|CA|G|1258
*
4V7M|1|CA|C|1277
4V7M|1|CA|U|1278
4V7M|1|CA|A|1279
4V7M|1|CA|A|1280
4V7M|1|CA|U|1281
4V7M|1|CA|C|1282

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CC
30S ribosomal protein S3
Chain CJ
30S ribosomal protein S10
Chain CN
30S ribosomal protein S14

Coloring options:


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