IL_4V7M_253

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGGC*GUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7M_253 not in the Motif Atlas

Geometric match to IL_7A0S_102

Geometric discrepancy: 0.3595

The information below is about IL_7A0S_102

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform with intercalation

Motif group

IL_58502.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

4V7M|1|DA|G|272|||C
4V7M|1|DA|G|272|||D
4V7M|1|DA|G|272|||E
4V7M|1|DA|C|272|||F
*
4V7M|1|DA|G|363|||D
4V7M|1|DA|U|363|||E
4V7M|1|DA|A|363|||F
4V7M|1|DA|C|364
4V7M|1|DA|C|365

Current chains

Chain DA

23S ribosomal RNA

Nearby chains