IL_4V7M_306

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGGA*UCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGGA,UCCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7M_306 not in the Motif Atlas

Geometric match to IL_2O3V_003

Geometric discrepancy: 0.3887

The information below is about IL_2O3V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4V7M|1|DA|G|1482
4V7M|1|DA|G|1484
4V7M|1|DA|G|1485
4V7M|1|DA|A|1486
*
4V7M|1|DA|U|1503
4V7M|1|DA|C|1504
4V7M|1|DA|C|1505
4V7M|1|DA|C|1506

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L2