IL_4V7M_324

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UCUU*GGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7M_324 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.3437

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V7M|1|DA|U|2096
4V7M|1|DA|C|2097
4V7M|1|DA|U|2098
4V7M|1|DA|U|2099
*
4V7M|1|DA|G|2190
4V7M|1|DA|G|2191
4V7M|1|DA|G|2192
4V7M|1|DA|G|2193

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DI

50S ribosomal protein L9