IL_4V7M_356

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCCC*GGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7M_356 not in the Motif Atlas

Geometric match to IL_8C3A_419

Geometric discrepancy: 0.3391

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4V7M|1|DB|C|2
4V7M|1|DB|C|3
4V7M|1|DB|C|4
4V7M|1|DB|C|5
*
4V7M|1|DB|G|116
4V7M|1|DB|G|117
4V7M|1|DB|G|118

Current chains

Chain DB

5S ribosomal RNA

Nearby chains

Chain DS

50S ribosomal protein L18