3D structure

PDB id
4V7M (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of Capreomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.45 Å

Loop

Sequence
CCGUC*GUCUGG
Length
11 nucleotides
Bulged bases
4V7M|1|CA|U|1196
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7M_382 not in the Motif Atlas
Geometric match to IL_7VYX_008
Geometric discrepancy: 0.3106
The information below is about IL_7VYX_008
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

4V7M|1|CA|C|1059
4V7M|1|CA|C|1060
4V7M|1|CA|G|1061
4V7M|1|CA|U|1062
4V7M|1|CA|C|1063
*
4V7M|1|CA|G|1193
4V7M|1|CA|U|1194
4V7M|1|CA|C|1195
4V7M|1|CA|U|1196
4V7M|1|CA|G|1197
4V7M|1|CA|G|1198

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CC
30S ribosomal protein S3
Chain CE
30S ribosomal protein S5
Chain CI
30S ribosomal protein S9
Chain CJ
30S ribosomal protein S10
Chain CN
30S ribosomal protein S14
Chain CV
RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3')
Chain CW
Transfer RNA; tRNA

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