IL_4V7M_382
3D structure
- PDB id
- 4V7M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structures of Capreomycin bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- CCGUC*GUCUGG
- Length
- 11 nucleotides
- Bulged bases
- 4V7M|1|CA|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7M_382 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3106
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
4V7M|1|CA|C|1059
4V7M|1|CA|C|1060
4V7M|1|CA|G|1061
4V7M|1|CA|U|1062
4V7M|1|CA|C|1063
*
4V7M|1|CA|G|1193
4V7M|1|CA|U|1194
4V7M|1|CA|C|1195
4V7M|1|CA|U|1196
4V7M|1|CA|G|1197
4V7M|1|CA|G|1198
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CC
- 30S ribosomal protein S3
- Chain CE
- 30S ribosomal protein S5
- Chain CI
- 30S ribosomal protein S9
- Chain CJ
- 30S ribosomal protein S10
- Chain CN
- 30S ribosomal protein S14
- Chain CV
- RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3')
- Chain CW
- Transfer RNA; tRNA
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