IL_4V7M_386

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7M_386 not in the Motif Atlas

Homologous match to IL_9DFE_026

Geometric discrepancy: 0.1204

The information below is about IL_9DFE_026

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V7M|1|DA|U|858
4V7M|1|DA|G|859
4V7M|1|DA|U|860
4V7M|1|DA|A|861
4V7M|1|DA|G|862
*
4V7M|1|DA|C|915
4V7M|1|DA|G|916
4V7M|1|DA|A|917
4V7M|1|DA|A|918
4V7M|1|DA|G|919

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DQ

50S ribosomal protein L16