IL_4V7P_316
3D structure
- PDB id
- 4V7P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Recognition of the amber stop codon by release factor RF1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.62 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 4V7P|1|DA|U|244, 4V7P|1|DA|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7P_316 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0732
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V7P|1|DA|C|242
4V7P|1|DA|A|243
4V7P|1|DA|U|244
4V7P|1|DA|C|245
4V7P|1|DA|A|246
4V7P|1|DA|G|247
*
4V7P|1|DA|C|277
4V7P|1|DA|G|278
4V7P|1|DA|A|279
4V7P|1|DA|C|280
4V7P|1|DA|G|281
4V7P|1|DA|A|282
4V7P|1|DA|C|283
4V7P|1|DA|G|284
Current chains
- Chain DA
- 16S rRNA (1504-MER)
Nearby chains
- Chain DL
- 30S ribosomal protein S12
- Chain DQ
- 30S ribosomal protein S17
Coloring options: