IL_4V7P_326
3D structure
- PDB id
- 4V7P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Recognition of the amber stop codon by release factor RF1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.62 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V7P|1|DA|A|532, 4V7P|1|DA|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7P_326 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1789
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V7P|1|DA|G|515
4V7P|1|DA|U|516
4V7P|1|DA|G|517
4V7P|1|DA|C|518
4V7P|1|DA|C|519
4V7P|1|DA|A|520
4V7P|1|DA|G|521
*
4V7P|1|DA|C|528
4V7P|1|DA|G|529
4V7P|1|DA|G|530
4V7P|1|DA|U|531
4V7P|1|DA|A|532
4V7P|1|DA|A|533
4V7P|1|DA|U|534
4V7P|1|DA|A|535
4V7P|1|DA|C|536
Current chains
- Chain DA
- 16S rRNA (1504-MER)
Nearby chains
- Chain DC
- 30S ribosomal protein S3
- Chain DL
- 30S ribosomal protein S12
- Chain DV
- Peptide chain release factor 1
- Chain DX
- messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')
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