IL_4V7R_004

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

4V7R|1|A1|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_004 not in the Motif Atlas

Homologous match to IL_4V88_386

Geometric discrepancy: 0.4755

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

4V7R|1|A1|U|37
4V7R|1|A1|C|38
4V7R|1|A1|A|39
4V7R|1|A1|A|40
4V7R|1|A1|A|41
*
4V7R|1|A1|U|466
4V7R|1|A1|G|467
4V7R|1|A1|A|468
4V7R|1|A1|C|469
4V7R|1|A1|A|470
4V7R|1|A1|A|471

Current chains

Chain A1

18S ribosomal RNA

Nearby chains