IL_4V7R_012

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V7R|1|A1|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_012 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1874

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V7R|1|A1|G|143
4V7R|1|A1|U|144
4V7R|1|A1|A|145
4V7R|1|A1|U|146
4V7R|1|A1|A|147
4V7R|1|A1|A|148
4V7R|1|A1|C|149
*
4V7R|1|A1|G|165
4V7R|1|A1|C|166
4V7R|1|A1|U|167
4V7R|1|A1|A|168
4V7R|1|A1|A|169
4V7R|1|A1|U|170
4V7R|1|A1|A|171
4V7R|1|A1|C|172

Current chains

Chain A1

18S ribosomal RNA

Nearby chains