IL_4V7R_024

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_024 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.1714

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4V7R|1|A1|C|443
4V7R|1|A1|C|444
4V7R|1|A1|A|445
4V7R|1|A1|A|446
4V7R|1|A1|U|447
*
4V7R|1|A1|A|460
4V7R|1|A1|G|461

Current chains

Chain A1

18S ribosomal RNA

Nearby chains