IL_4V7R_036

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_036 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1798

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7R|1|A1|G|642
4V7R|1|A1|G|643
4V7R|1|A1|C|644
*
4V7R|1|A1|G|690
4V7R|1|A1|C|691
4V7R|1|A1|C|692

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain Ab

Unassigned secondary structure