IL_4V7R_069

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_069 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1484

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4V7R|1|A1|G|1294
4V7R|1|A1|G|1295
4V7R|1|A1|A|1296
*
4V7R|1|A1|U|1301
4V7R|1|A1|U|1302
4V7R|1|A1|U|1303

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S0-A

Chain AB

40S ribosomal protein S2