IL_4V7R_089

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_089 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.1475

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4V7R|1|A1|U|1669
4V7R|1|A1|G|1670
4V7R|1|A1|A|1671
4V7R|1|A1|G|1672
*
4V7R|1|A1|C|1729
4V7R|1|A1|A|1730
4V7R|1|A1|A|1731
4V7R|1|A1|A|1732

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain B1

Large subunit ribosomal RNA; LSU rRNA

Chain BV

60S ribosomal protein L24-A