IL_4V7R_134

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_134 not in the Motif Atlas

Homologous match to IL_5TBW_030

Geometric discrepancy: 0.1401

The information below is about IL_5TBW_030

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

4V7R|1|B1|U|834
4V7R|1|B1|G|835
4V7R|1|B1|A|836
4V7R|1|B1|A|837
4V7R|1|B1|G|838
*
4V7R|1|B1|U|855
4V7R|1|B1|G|856
4V7R|1|B1|G|857
4V7R|1|B1|A|858
4V7R|1|B1|G|859

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L2

Chain BS

60S ribosomal protein L19

Chain Bg

60S ribosomal protein L43