IL_4V7R_167
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- GUAGUAGC*GCGAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7R_167 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.3079
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V7R|1|B1|G|1444
4V7R|1|B1|U|1445
4V7R|1|B1|A|1446
4V7R|1|B1|G|1447
4V7R|1|B1|U|1448
4V7R|1|B1|A|1449
4V7R|1|B1|G|1450
4V7R|1|B1|C|1451
*
4V7R|1|B1|G|2353
4V7R|1|B1|C|2354
4V7R|1|B1|G|2355
4V7R|1|B1|A|2356
4V7R|1|B1|A|2357
4V7R|1|B1|A|2358
4V7R|1|B1|C|2359
Current chains
- Chain B1
- 25S ribosomal RNA
Nearby chains
- Chain B3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BD
- 60S ribosomal protein L4-A
- Chain BQ
- 60S ribosomal protein L17-A
Coloring options: