IL_4V7R_168

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_168 not in the Motif Atlas

Geometric match to IL_7RQB_050

Geometric discrepancy: 0.2535

The information below is about IL_7RQB_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4V7R|1|B1|G|1492
4V7R|1|B1|G|1493
4V7R|1|B1|U|1494
4V7R|1|B1|U|1495
*
4V7R|1|B1|A|1835
4V7R|1|B1|C|1836

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BW

60S ribosomal protein L25

Chain Bd

60S ribosomal protein L37-A

Chain Be

60S ribosomal protein L39