IL_4V7R_169

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

4V7R|1|B1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_169 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.2289

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4V7R|1|B1|U|1501
4V7R|1|B1|C|1502
4V7R|1|B1|A|1503
4V7R|1|B1|A|1504
4V7R|1|B1|C|1505
*
4V7R|1|B1|G|1513
4V7R|1|B1|G|1514
4V7R|1|B1|A|1515

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BQ

60S ribosomal protein L17-A

Chain BS

60S ribosomal protein L19

Chain Be

60S ribosomal protein L39