3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
UGA*UUA
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_205 not in the Motif Atlas
Geometric match to IL_3R1D_002
Geometric discrepancy: 0.1753
The information below is about IL_3R1D_002
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

4V7R|1|B1|U|2436
4V7R|1|B1|G|2437
4V7R|1|B1|A|2438
*
4V7R|1|B1|U|2509
4V7R|1|B1|U|2510
4V7R|1|B1|A|2511

Current chains

Chain B1
25S ribosomal RNA

Nearby chains

Chain BH
60S ribosomal protein L8-A

Coloring options:


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