IL_4V7R_218

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

4V7R|1|B1|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_218 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.2067

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V7R|1|B1|G|2828
4V7R|1|B1|U|2829
4V7R|1|B1|G|2830
*
4V7R|1|B1|U|2858
4V7R|1|B1|U|2859
4V7R|1|B1|U|2860
4V7R|1|B1|U|2861
4V7R|1|B1|U|2862

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BC

60S ribosomal protein L3

Chain BJ

60S ribosomal protein L10