3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
CG*UUUG
Length
6 nucleotides
Bulged bases
4V7R|1|B1|U|3382
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_246 not in the Motif Atlas
Geometric match to IL_7A0S_054
Geometric discrepancy: 0.3498
The information below is about IL_7A0S_054
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

4V7R|1|B1|C|3324
4V7R|1|B1|G|3325
*
4V7R|1|B1|U|3380
4V7R|1|B1|U|3381
4V7R|1|B1|U|3382
4V7R|1|B1|G|3383

Current chains

Chain B1
25S ribosomal RNA

Nearby chains

Chain BC
60S ribosomal protein L3
Chain Ba
60S ribosomal protein L31-A

Coloring options:


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