IL_4V7R_254

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UAAU*AUCGA

Length

9 nucleotides

Bulged bases

4V7R|1|B3|G|95

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_254 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3344

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V7R|1|B3|U|64
4V7R|1|B3|A|65
4V7R|1|B3|A|66
4V7R|1|B3|U|67
*
4V7R|1|B3|A|92
4V7R|1|B3|U|93
4V7R|1|B3|C|94
4V7R|1|B3|G|95
4V7R|1|B3|A|96

Current chains

Chain B3

5.8S ribosomal RNA

Nearby chains

Chain B1

Large subunit ribosomal RNA; LSU rRNA

Chain BX

60S ribosomal protein L26-A

Chain Bc

60S ribosomal protein L35

Chain Bd

60S ribosomal protein L37-A