IL_4V7R_256

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AUG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_256 not in the Motif Atlas

Geometric match to IL_1L9A_003

Geometric discrepancy: 0.1307

The information below is about IL_1L9A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

4V7R|1|C1|A|28
4V7R|1|C1|U|29
4V7R|1|C1|G|30
*
4V7R|1|C1|C|596
4V7R|1|C1|G|597
4V7R|1|C1|U|598

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CE

40S ribosomal protein S9-A

Chain CP

40S ribosomal protein S23