IL_4V7R_292

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_292 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.2867

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V7R|1|C1|G|703
4V7R|1|C1|C|704
4V7R|1|C1|U|705
4V7R|1|C1|A|706
4V7R|1|C1|A|707
4V7R|1|C1|C|708
*
4V7R|1|C1|G|730
4V7R|1|C1|C|731
4V7R|1|C1|G|732
4V7R|1|C1|A|733
4V7R|1|C1|A|734
4V7R|1|C1|C|735

Current chains

Chain C1

18S ribosomal RNA

Nearby chains