IL_4V7R_293

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CCUUG*CUUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_293 not in the Motif Atlas

Homologous match to IL_4V88_422

Geometric discrepancy: 0.4593

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V7R|1|C1|C|708
4V7R|1|C1|C|709
4V7R|1|C1|U|710
4V7R|1|C1|U|711
4V7R|1|C1|G|712
*
4V7R|1|C1|C|726
4V7R|1|C1|U|727
4V7R|1|C1|U|728
4V7R|1|C1|G|729
4V7R|1|C1|G|730

Current chains

Chain C1

18S ribosomal RNA

Nearby chains