IL_4V7R_294

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_294 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.228

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

4V7R|1|C1|A|746
4V7R|1|C1|C|747
*
4V7R|1|C1|G|802
4V7R|1|C1|A|803
4V7R|1|C1|A|804
4V7R|1|C1|U|805

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CF

40S ribosomal protein S11

Chain CO

40S ribosomal protein S22-A