IL_4V7R_296

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GAAAAAAUU*AUAUUAGC

Length

17 nucleotides

Bulged bases

4V7R|1|C1|U|794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_296 not in the Motif Atlas

Homologous match to IL_4V88_425

Geometric discrepancy: 0.3511

The information below is about IL_4V88_425

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53064.1

Basepair signature

cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V7R|1|C1|G|751
4V7R|1|C1|A|752
4V7R|1|C1|A|753
4V7R|1|C1|A|754
4V7R|1|C1|A|755
4V7R|1|C1|A|756
4V7R|1|C1|A|757
4V7R|1|C1|U|758
4V7R|1|C1|U|759
*
4V7R|1|C1|A|791
4V7R|1|C1|U|792
4V7R|1|C1|A|793
4V7R|1|C1|U|794
4V7R|1|C1|U|795
4V7R|1|C1|A|796
4V7R|1|C1|G|797
4V7R|1|C1|C|798

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CE

40S ribosomal protein S9-A

Chain CF

40S ribosomal protein S11

Chain CO

40S ribosomal protein S22-A