IL_4V7R_306

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AUG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_306 not in the Motif Atlas

Geometric match to IL_4P3U_012

Geometric discrepancy: 0.2064

The information below is about IL_4P3U_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V7R|1|C1|A|995
4V7R|1|C1|U|996
4V7R|1|C1|G|997
*
4V7R|1|C1|C|1007
4V7R|1|C1|G|1008
4V7R|1|C1|U|1009

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CH

40S ribosomal protein S14-A

Chain D1

Large subunit ribosomal RNA; LSU rRNA