IL_4V7R_312

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGGA*UUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_312 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.3975

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4V7R|1|C1|C|1148
4V7R|1|C1|G|1149
4V7R|1|C1|G|1150
4V7R|1|C1|A|1151
*
4V7R|1|C1|U|1627
4V7R|1|C1|U|1628
4V7R|1|C1|G|1629

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CB

40S ribosomal protein S2