IL_4V7R_322

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V7R|1|C1|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_322 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.3012

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V7R|1|C1|C|1280
4V7R|1|C1|G|1281
*
4V7R|1|C1|C|1426
4V7R|1|C1|A|1427
4V7R|1|C1|G|1428

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CB

40S ribosomal protein S2

Chain CC

40S ribosomal protein S3

Chain CN

40S ribosomal protein S20

Chain CS

40S ribosomal protein S29-A