IL_4V7R_334

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_334 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.2236

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V7R|1|C1|G|1498
4V7R|1|C1|G|1499
4V7R|1|C1|C|1500
*
4V7R|1|C1|G|1507
4V7R|1|C1|U|1508
4V7R|1|C1|C|1509

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CM

40S ribosomal protein S19-A