IL_4V7R_337

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_337 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1932

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V7R|1|C1|G|1638
4V7R|1|C1|C|1639
4V7R|1|C1|C|1640
4V7R|1|C1|C|1641
*
4V7R|1|C1|G|1760
4V7R|1|C1|U|1761
4V7R|1|C1|A|1762
4V7R|1|C1|A|1763
4V7R|1|C1|C|1764

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain D1

Large subunit ribosomal RNA; LSU rRNA