IL_4V7R_341

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_341 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.1566

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4V7R|1|C1|C|1653
4V7R|1|C1|G|1654
4V7R|1|C1|A|1655
4V7R|1|C1|U|1656
*
4V7R|1|C1|A|1744
4V7R|1|C1|G|1745
4V7R|1|C1|A|1746
4V7R|1|C1|G|1747

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain D1

Large subunit ribosomal RNA; LSU rRNA