IL_4V7R_345

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_345 not in the Motif Atlas

Homologous match to IL_4V88_472

Geometric discrepancy: 0.1582

The information below is about IL_4V88_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7R|1|C1|G|1672
4V7R|1|C1|G|1673
4V7R|1|C1|C|1674
*
4V7R|1|C1|G|1727
4V7R|1|C1|A|1728
4V7R|1|C1|C|1729

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain DV

60S ribosomal protein L24-A