IL_4V7R_364

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUGUU*AACAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUGUU,AACAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_364 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3587

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V7R|1|D1|U|410
4V7R|1|D1|U|411
4V7R|1|D1|G|412
4V7R|1|D1|U|413
4V7R|1|D1|U|414
*
4V7R|1|D3|A|9
4V7R|1|D3|A|10
4V7R|1|D3|C|11
4V7R|1|D3|A|12
4V7R|1|D3|A|13

Current chains

Chain D1

25S ribosomal RNA

Chain D3

5.8S ribosomal RNA

Nearby chains

Chain DQ

60S ribosomal protein L17-A

Chain Db

60S ribosomal protein L32