IL_4V7R_378

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_378 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2761

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V7R|1|D1|C|752
4V7R|1|D1|C|753
*
4V7R|1|D1|G|779
4V7R|1|D1|A|780
4V7R|1|D1|G|781

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DR

60S ribosomal protein L18

Chain DY

60S ribosomal protein L28