IL_4V7R_383

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

4V7R|1|D1|A|933, 4V7R|1|D1|G|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_383 not in the Motif Atlas

Homologous match to IL_8C3A_030

Geometric discrepancy: 0.2709

The information below is about IL_8C3A_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V7R|1|D1|G|805
4V7R|1|D1|A|806
4V7R|1|D1|A|807
4V7R|1|D1|A|808
4V7R|1|D1|G|809
*
4V7R|1|D1|C|931
4V7R|1|D1|U|932
4V7R|1|D1|A|933
4V7R|1|D1|G|934
4V7R|1|D1|U|935
4V7R|1|D1|A|936
4V7R|1|D1|G|937
4V7R|1|D1|C|938

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DD

60S ribosomal protein L4-A

Chain DO

60S ribosomal protein L15-A

Chain DY

60S ribosomal protein L28

Chain Dd

60S ribosomal protein L37-A