3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
GGUU*AC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7R_418 not in the Motif Atlas
Geometric match to IL_7RQB_050
Geometric discrepancy: 0.2489
The information below is about IL_7RQB_050
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.2
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

4V7R|1|D1|G|1492
4V7R|1|D1|G|1493
4V7R|1|D1|U|1494
4V7R|1|D1|U|1495
*
4V7R|1|D1|A|1835
4V7R|1|D1|C|1836

Current chains

Chain D1
25S ribosomal RNA

Nearby chains

Chain DW
60S ribosomal protein L25
Chain Dd
60S ribosomal protein L37-A
Chain De
60S ribosomal protein L39

Coloring options:


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