IL_4V7R_439

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UCG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UCG,CGA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_439 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.2796

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

4V7R|1|D1|U|1950
4V7R|1|D1|C|1951
4V7R|1|D1|G|1952
*
4V7R|1|D1|C|2094
4V7R|1|D1|G|2095
4V7R|1|D1|A|2096

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DS

60S ribosomal protein L19