IL_4V7R_455

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UGA*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_455 not in the Motif Atlas

Geometric match to IL_3R1D_002

Geometric discrepancy: 0.1765

The information below is about IL_3R1D_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

4V7R|1|D1|U|2436
4V7R|1|D1|G|2437
4V7R|1|D1|A|2438
*
4V7R|1|D1|U|2509
4V7R|1|D1|U|2510
4V7R|1|D1|A|2511

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DH

60S ribosomal protein L8-A