IL_4V7R_476

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V7R|1|D1|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_476 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.2802

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

4V7R|1|D1|C|2960
4V7R|1|D1|G|2961
*
4V7R|1|D1|C|2970
4V7R|1|D1|A|2971
4V7R|1|D1|G|2972

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein L2